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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
total RNA-seq
73
ChIP-seq
69
single cell RNA-seq
53
ATAC-seq
10
WGBS
2
DNase-seq
1
FAIRE-seq
Assay category
164
Transcription
73
DNA binding
56
DNA accessibility
10
DNA methylation
Target of assay
48
histone
48
histone modification
28
broad histone mark
20
narrow histone mark
15
control
10
transcription factor
6
RNA binding protein
Date released
August, 2017
72
September, 2018
39
July, 2018
37
February, 2023
37
October, 2018
34
April, 2018
24
May, 2022
19
September, 2020
11
September, 2017
7
August, 2020
7
November, 2018
6
February, 2021
5
October, 2017
3
August, 2018
1
June, 2018
1
March, 2019
Available data
521
bam
464
bigWig
328
tsv
303
fastq
165
bed narrowPeak
80
zippedFastqFolder
74
bigBed narrowPeak
10
bed bed3+
9
bed broadPeak
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
3
tagAlign
1
bedpe
1
hdf5
Organism
303
Homo sapiens
Biosample type
217
primary cell
86
tissue
Organ
437
liver
303
pancreas
228
epithelium
60
blood
60
bodily fluid
29
connective tissue
27
embryo
26
adipose tissue
24
spleen
21
brain
6
vasculature
3
blood vessel
Project
234
AMP
69
HPAP
Genome assembly (visualization)
210
hg19
205
GRCh38
Lab
208
AMP-T2D consortium
69
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
BIOSAMPLE
ASSAY
303 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
52
12
12
6
pancreatic beta cell
21
12
9
pancreatic ductal cell
4
13
9
4
pancreatic acinar cell
4
8
9
4
pancreatic delta cell
11
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tissue
body of pancreas
33
4
2
2
islet of Langerhans
14
6
20
pancreas
2
2
1
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