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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
103
total RNA-seq
29
ATAC-seq
10
DNase-seq
10
WGBS
3
RRBS
2
FAIRE-seq
Assay category
172
DNA binding
103
Transcription
41
DNA accessibility
13
DNA methylation
Target of assay
69
histone modification
68
histone
55
control
48
transcription factor
42
broad histone mark
26
narrow histone mark
13
RNA binding protein
3
other context
3
other post-translational modification
Date released
175
August, 2017
58
October, 2018
December, 2017
26
November, 2018
24
May, 2022
17
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
July, 2018
1
March, 2019
Available data
1859
bam
1696
bigWig
1076
tsv
908
bed narrowPeak
525
bigBed narrowPeak
329
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
322
Homo sapiens
Biosample type
427
cell line
409
primary cell
329
tissue
98
in vitro differentiated cells
1
stem cell
Organ
213
pancreas
43
adipose tissue
43
connective tissue
35
liver
24
spleen
12
brain
2
musculature of body
Project
329
AMP
Genome assembly (visualization)
258
hg19
244
GRCh38
Lab
303
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
December, 2017
BIOSAMPLE
ASSAY
329 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
RRBS
FAIRE-seq
tissue
islet of Langerhans
28
103
20
1
1
body of pancreas
33
4
2
2
liver
29
2
1
1
spleen
20
1
1
2
pancreas
16
2
1
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