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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
89
total RNA-seq
4
WGBS
3
RRBS
2
ATAC-seq
2
DNase-seq
1
FAIRE-seq
Assay category
128
DNA binding
89
Transcription
7
DNA methylation
5
DNA accessibility
Target of assay
65
histone modification
64
histone
45
transcription factor
33
broad histone mark
30
narrow histone mark
18
control
6
RNA binding protein
2
chromatin remodeller
Date released
315
November, 2017
229
August, 2017
94
December, 2017
87
November, 2018
58
October, 2018
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
6
April, 2018
6
September, 2017
5
January, 2018
2
July, 2018
1
August, 2018
March, 2019
Available data
229
fastq
226
bigWig
224
bam
109
bed narrowPeak
89
tsv
73
tagAlign
33
bed bed3+
27
bed broadPeak
23
bigBed narrowPeak
5
bed bedMethyl
5
bigBed bedMethyl
1
bigBed broadPeak
Organism
222
Homo sapiens
Biosample type
175
tissue
primary cell
54
in vitro differentiated cells
Organ
127
pancreas
72
connective tissue
28
liver
18
adipose tissue
2
musculature of body
Project
229
AMP
Genome assembly (visualization)
209
hg19
207
GRCh38
Lab
229
AMP-T2D consortium
Audit category:
27
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
month_released!
March, 2019
biosample_type!
primary cell
BIOSAMPLE
ASSAY
229 results
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ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
22
89
1
1
liver
25
1
1
pancreas
14
white adipose tissue
12
adipose tissue
2
3
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in vitro differentiated cells
adipocyte
53
1
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