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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
single cell RNA-seq
94
total RNA-seq
62
ChIP-seq
27
snATAC-seq
18
ATAC-seq
6
WGBS
1
DNase-seq
1
RRBS
Assay category
221
Transcription
62
DNA binding
46
DNA accessibility
7
DNA methylation
Target of assay
41
histone
41
histone modification
25
narrow histone mark
16
broad histone mark
16
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
76
February, 2023
September, 2018
58
August, 2017
48
July, 2018
45
February, 2021
41
September, 2020
38
April, 2018
9
November, 2017
7
August, 2020
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
541
bigWig
537
bam
336
fastq
249
bed narrowPeak
244
tsv
153
zippedFastqFolder
100
tagAlign
95
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
csv
1
tar
Organism
336
Homo sapiens
Biosample type
427
cell line
377
tissue
336
primary cell
141
in vitro differentiated cells
4
stem cell
Organ
186
pancreas
177
epithelium
9
brain
6
vasculature
3
blood vessel
3
connective tissue
Project
169
HPAP
167
AMP
Genome assembly (visualization)
157
GRCh38
154
hg19
Lab
169
Klaus Kaestner, Upenn
167
AMP-T2D consortium
Audit category:
27
audit script error
7
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
September, 2018
BIOSAMPLE
ASSAY
336 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
DNase-seq
RRBS
primary cell
pancreatic alpha cell
12
42
13
10
6
Langerhans cell
34
27
pancreatic beta cell
12
11
13
6
exocrine cell
39
skeletal muscle myoblast
15
1
1
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