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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
snATAC-seq
24
ChIP-seq
15
total RNA-seq
12
single cell RNA-seq
6
WGBS
Assay category
27
DNA accessibility
27
Transcription
24
DNA binding
6
DNA methylation
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
control
8
narrow histone mark
Date released
324
November, 2017
287
August, 2017
94
December, 2017
88
November, 2018
76
February, 2023
73
September, 2018
60
October, 2018
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
611
bam
582
bigWig
574
tsv
89
txt
84
fastq
39
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
84
Homo sapiens
Biosample type
45
primary cell
39
in vitro differentiated cells
Organ
13
embryo
6
epithelium
6
pancreas
Project
45
HPAP
39
AMP
Genome assembly (visualization)
31
GRCh38
31
hg19
Lab
45
Klaus Kaestner, Upenn
39
AMP-T2D consortium
Audit category:
27
audit script error
Audit category:
2
inconsistent control read length
BIOSAMPLE
ASSAY
84 results
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snATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
in vitro differentiated cells
pancreatic endoderm
9
4
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
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