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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
324
ChIP-seq
27
snATAC-seq
12
single cell RNA-seq
6
WGBS
Assay category
324
DNA binding
27
DNA accessibility
12
Transcription
6
DNA methylation
Target of assay
244
transcription factor
66
recombinant protein
59
control
37
RNA binding protein
18
histone
18
histone modification
15
chromatin remodeller
10
narrow histone mark
8
broad histone mark
2
other context
2
other post-translational modification
Date released
324
November, 2017
287
August, 2017
94
December, 2017
88
November, 2018
76
February, 2023
73
September, 2018
60
October, 2018
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
964
bam
885
bigWig
559
tsv
369
fastq
336
bed narrowPeak
312
bigBed narrowPeak
89
txt
86
tagAlign
70
bed broadPeak
64
bigBed broadPeak
6
csv
4
bed bedgraph
3
tar
2
bed bed3
2
bed bed3+
Organism
369
Homo sapiens
Biosample type
315
cell line
54
primary cell
Organ
315
liver
12
epithelium
9
brain
6
pancreas
6
vasculature
3
blood vessel
Project
324
AMP
45
HPAP
Genome assembly (visualization)
275
hg19
223
GRCh38
Lab
324
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
27
audit script error
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
369 results
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Clear Filters
ChIP-seq
snATAC-seq
single cell RNA-seq
WGBS
cell line
HepG2
315
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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