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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
ChIP-seq
91
total RNA-seq
48
single cell RNA-seq
5
ATAC-seq
4
RRBS
4
WGBS
3
DNase-seq
1
FAIRE-seq
Assay category
181
DNA binding
139
Transcription
9
DNA accessibility
8
DNA methylation
Target of assay
103
histone modification
102
histone
52
narrow histone mark
49
broad histone mark
47
transcription factor
31
control
8
RNA binding protein
3
chromatin remodeller
Date released
324
November, 2017
287
August, 2017
94
December, 2017
88
November, 2018
76
February, 2023
73
September, 2018
60
October, 2018
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
446
bam
436
bigWig
337
fastq
253
tsv
142
bed narrowPeak
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
330
Homo sapiens
Biosample type
177
tissue
106
primary cell
54
in vitro differentiated cells
Organ
207
pancreas
74
connective tissue
62
epithelium
28
liver
18
adipose tissue
2
musculature of body
Project
337
AMP
Genome assembly (visualization)
305
hg19
299
GRCh38
Lab
337
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
337 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
RRBS
WGBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
22
91
1
1
liver
25
1
1
pancreas
14
white adipose tissue
12
adipose tissue
2
3
+ See 3 more…
primary cell
pancreatic beta cell
13
9
1
pancreatic alpha cell
13
7
1
skeletal muscle myoblast
15
1
1
pancreatic endocrine cell
12
pancreatic acinar cell
5
1
+ See 12 more…
in vitro differentiated cells
adipocyte
53
1
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