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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
324
ChIP-seq
48
single cell RNA-seq
2
total RNA-seq
Assay category
324
DNA binding
50
Transcription
Target of assay
244
transcription factor
66
recombinant protein
59
control
37
RNA binding protein
18
histone
18
histone modification
15
chromatin remodeller
10
narrow histone mark
8
broad histone mark
2
other context
2
other post-translational modification
Date released
324
November, 2017
287
August, 2017
94
December, 2017
88
November, 2018
76
February, 2023
73
September, 2018
60
October, 2018
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
556
bam
498
bigWig
374
fastq
313
bed narrowPeak
312
bigBed narrowPeak
164
tsv
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
374
Homo sapiens
Biosample type
315
cell line
57
primary cell
2
tissue
Organ
315
liver
39
epithelium
39
pancreas
9
brain
6
vasculature
3
blood vessel
2
connective tissue
Project
374
AMP
Genome assembly (visualization)
325
hg19
273
GRCh38
Lab
374
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
374 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
cell line
HepG2
315
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
astrocyte of the cerebellum
3
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tissue
islet of Langerhans
2
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