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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
333
ChIP-seq
8
ATAC-seq
Assay category
333
DNA binding
8
DNA accessibility
Target of assay
244
transcription factor
66
recombinant protein
61
control
37
RNA binding protein
25
histone
25
histone modification
15
chromatin remodeller
14
broad histone mark
11
narrow histone mark
2
other context
2
other post-translational modification
Date released
324
November, 2017
287
August, 2017
94
December, 2017
88
November, 2018
76
February, 2023
73
September, 2018
60
October, 2018
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
407
bam
348
bigWig
341
fastq
325
bed narrowPeak
318
bigBed narrowPeak
92
tagAlign
74
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
341
Homo sapiens
Biosample type
315
cell line
17
tissue
9
primary cell
Organ
315
liver
19
brain
6
epithelium
6
vasculature
5
pancreas
3
blood vessel
1
adipose tissue
1
connective tissue
1
spleen
Project
341
AMP
Genome assembly (visualization)
288
hg19
237
GRCh38
Lab
340
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
14
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
341 results
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ChIP-seq
ATAC-seq
cell line
HepG2
315
tissue
brain
9
body of pancreas
4
cerebellum (Hemisphere)
1
islet of Langerhans
1
omental fat pad
1
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primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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