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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
89
total RNA-seq
4
ATAC-seq
4
RRBS
2
DNase-seq
1
FAIRE-seq
1
WGBS
Assay category
114
DNA binding
89
Transcription
7
DNA accessibility
5
DNA methylation
Target of assay
77
histone modification
76
histone
39
narrow histone mark
37
broad histone mark
24
control
13
transcription factor
4
RNA binding protein
1
chromatin remodeller
Date released
324
November, 2017
215
August, 2017
94
December, 2017
87
November, 2018
76
February, 2023
73
September, 2018
48
July, 2018
45
February, 2021
43
April, 2018
41
September, 2020
39
February, 2018
37
October, 2018
35
December, 2018
30
January, 2019
24
May, 2022
16
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
3
August, 2018
3
June, 2018
1
March, 2019
Available data
215
fastq
211
bam
207
bigWig
96
bed narrowPeak
89
tsv
63
tagAlign
39
bed broadPeak
39
bigBed narrowPeak
22
bed bed3+
14
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
208
Homo sapiens
Biosample type
157
tissue
58
primary cell
Organ
168
pancreas
connective tissue
29
epithelium
28
liver
18
adipose tissue
2
musculature of body
Project
215
AMP
Genome assembly (visualization)
192
hg19
184
GRCh38
Lab
215
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
215 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
RRBS
DNase-seq
FAIRE-seq
WGBS
tissue
islet of Langerhans
22
89
1
1
liver
25
1
1
pancreas
14
skeletal muscle tissue
2
right lobe of liver
1
primary cell
skeletal muscle myoblast
15
1
1
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
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