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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
15
total RNA-seq
4
GRO-seq
1
DNase-seq
1
pCHi-C
Assay category
101
DNA binding
15
Transcription
1
DNA accessibility
Target of assay
51
histone
51
histone modification
31
transcription factor
26
narrow histone mark
24
broad histone mark
19
control
4
RNA binding protein
2
chromatin remodeller
Date released
54
August, 2017
39
February, 2018
24
December, 2017
4
January, 2018
1
August, 2018
Available data
267
bam
239
bigWig
129
tsv
122
fastq
114
bed narrowPeak
37
tagAlign
25
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
122
Homo sapiens
Biosample type
427
cell line
377
tissue
171
primary cell
122
in vitro differentiated cells
4
stem cell
Organ
55
connective tissue
27
embryo
epithelium
15
liver
1
adipose tissue
Project
122
AMP
Genome assembly (visualization)
102
GRCh38
102
hg19
4
hg18
Lab
122
AMP-T2D consortium
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
organ_slims!
epithelium
BIOSAMPLE
ASSAY
122 results
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ChIP-seq
total RNA-seq
GRO-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
53
1
pancreatic endoderm
18
4
1
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
Posterior foregut
5
1
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