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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
DNase-seq
152
ATAC-seq
27
snATAC-seq
4
FAIRE-seq
Assay category
1451
DNA binding
1335
Transcription
375
DNA accessibility
24
DNA methylation
1
3D chromatin structure
Date released
173
June, 2019
45
February, 2021
45
May, 2020
25
November, 2019
18
May, 2022
13
May, 2021
10
August, 2021
10
November, 2018
10
October, 2019
8
July, 2019
8
October, 2017
7
August, 2017
2
November, 2020
1
March, 2019
Available data
438
bed narrowPeak
347
bam
298
bigWig
201
bigBed narrowPeak
193
bed bed3+
192
bed broadPeak
190
bigBed broadPeak
70
fastq
64
xls
21
zippedFastqFolder
13
tsv
12
bed bed3
7
bed bedgraph
4
txt
Organism
375
Homo sapiens
Biosample type
246
tissue
101
primary cell
18
in vitro differentiated cells
10
cell line
Organ
86
pancreas
80
kidney
epithelium
44
limb
42
heart
35
brain
33
musculature of body
23
vasculature
21
blood vessel
18
ureter
14
artery
14
connective tissue
8
bone element
8
liver
8
skeleton
5
adipose tissue
4
eye
3
nerve
3
vein
2
spleen
Project
348
AMP
27
HPAP
Genome assembly (visualization)
328
hg19
278
GRCh38
Lab
328
AMP-T2D consortium
27
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
16
inconsistent ontology term
1
inconsistent replicate
organ_slims!
epithelium
BIOSAMPLE
ASSAY
375 results
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Clear Filters
DNase-seq
ATAC-seq
snATAC-seq
FAIRE-seq
tissue
islet of Langerhans
1
39
1
heart
18
muscle of arm
17
brain
14
kidney
13
1
+ See 52 more…
primary cell
Langerhans cell
27
monocyte
15
cardiac fibroblast
3
osteoblast
1
2
B cell
2
+ See 32 more…
in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
adipocyte
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cell line
smooth muscle cell of the coronary artery
8
HepG2
1
Panc1
1
See all biosamples
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