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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
684
ChIP-seq
190
DNase-seq
147
total RNA-seq
62
single cell RNA-seq
29
ATAC-seq
27
snATAC-seq
11
WGBS
4
RRBS
2
FAIRE-seq
1
GRO-seq
1
Hi-C
Assay category
684
DNA binding
248
DNA accessibility
209
Transcription
15
DNA methylation
1
3D chromatin structure
Target of assay
419
transcription factor
132
control
128
histone modification
127
histone
82
recombinant protein
81
RNA binding protein
71
broad histone mark
56
narrow histone mark
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
318
November, 2017
204
August, 2017
173
June, 2019
88
November, 2018
58
October, 2018
51
December, 2017
39
February, 2021
39
February, 2023
35
December, 2018
30
January, 2019
24
May, 2022
22
September, 2020
17
July, 2018
17
October, 2017
15
April, 2018
12
September, 2018
6
September, 2017
5
October, 2019
2
June, 2018
1
January, 2018
1
March, 2019
1
November, 2020
Available data
2808
bam
2629
bigWig
1552
bed narrowPeak
1315
tsv
979
fastq
963
bigBed narrowPeak
354
tagAlign
299
bed broadPeak
262
bigBed broadPeak
227
bed bed3+
158
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
13
hic
11
bedpe bed3+
8
csv
7
bed bed3
3
hdf5
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
1151
Homo sapiens
Biosample type
544
tissue
428
cell line
182
primary cell
in vitro differentiated cells
4
stem cell
Organ
476
pancreas
452
liver
epithelium
78
kidney
60
blood
60
bodily fluid
53
connective tissue
51
brain
44
adipose tissue
36
limb
35
musculature of body
30
heart
24
spleen
19
vasculature
18
ureter
14
blood vessel
4
artery
4
eye
4
vein
2
nerve
Project
1058
AMP
100
HPAP
Genome assembly (visualization)
895
hg19
847
GRCh38
1
hg18
Lab
1032
AMP-T2D consortium
100
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
28
inconsistent control
27
audit script error
9
inconsistent ontology term
Audit category:
62
missing controlled_by
Audit category:
35
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
organ_slims!
epithelium
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
1158 results
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ChIP-seq
DNase-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
RRBS
FAIRE-seq
GRO-seq
Hi-C
tissue
islet of Langerhans
28
1
103
20
1
liver
67
2
1
1
body of pancreas
33
4
4
2
spleen
20
1
1
2
brain
9
14
+ See 44 more…
cell line
HepG2
360
5
1
1
GM12878
60
Panc1
1
primary cell
Langerhans cell
34
27
exocrine cell
39
pancreatic endocrine cell
23
skeletal muscle myoblast
15
1
1
pancreatic cell
9
+ See 16 more…
stem cell
hESC
3
1
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