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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
DNase-seq
12
ChIP-seq
1
ATAC-seq
Assay category
31
DNA accessibility
12
DNA binding
Target of assay
8
histone
8
histone modification
6
broad histone mark
3
control
2
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
28
June, 2019
10
October, 2017
3
November, 2017
2
November, 2018
Available data
235
bam
213
bigWig
197
bed narrowPeak
121
bigBed narrowPeak
118
tagAlign
41
bed broadPeak
32
bed bed3+
32
bigBed broadPeak
26
tsv
15
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
43
Homo sapiens
Biosample type
37
tissue
6
primary cell
Organ
476
pancreas
467
liver
epithelium
108
connective tissue
78
kidney
60
blood
60
bodily fluid
51
brain
45
adipose tissue
36
limb
35
musculature of body
30
heart
27
embryo
24
spleen
19
vasculature
18
ureter
14
blood vessel
4
artery
4
eye
4
vein
2
nerve
Project
43
AMP
Genome assembly (visualization)
39
GRCh38
29
hg19
Lab
43
AMP-T2D consortium
Audit category:
4
missing controlled_by
organ_slims!
epithelium
BIOSAMPLE
ASSAY
43 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
brain
14
9
cerebellum (Hemisphere)
1
1
frontal cortex
2
Ammon's horn
1
caudate nucleus
1
+ See 8 more…
primary cell
astrocyte of the cerebellum
1
3
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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