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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
ChIP-seq
4
RRBS
4
WGBS
2
ATAC-seq
2
DNase-seq
Assay category
107
DNA binding
8
DNA methylation
4
DNA accessibility
Target of assay
51
histone modification
50
histone
40
transcription factor
25
broad histone mark
24
narrow histone mark
16
control
6
RNA binding protein
3
chromatin remodeller
Date released
324
November, 2017
119
August, 2017
94
December, 2017
81
November, 2018
39
February, 2018
39
February, 2021
39
February, 2023
35
December, 2018
30
January, 2019
23
October, 2018
22
September, 2020
12
October, 2017
11
July, 2018
10
April, 2018
5
January, 2018
2
June, 2018
1
August, 2018
1
September, 2018
Available data
119
fastq
114
bam
113
bigWig
93
bed narrowPeak
69
tagAlign
29
bed broadPeak
25
bigBed narrowPeak
15
bigBed broadPeak
14
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
Organism
119
Homo sapiens
Biosample type
54
in vitro differentiated cells
48
tissue
17
primary cell
Organ
pancreas
72
connective tissue
29
epithelium
28
liver
18
adipose tissue
2
musculature of body
Project
119
AMP
Genome assembly (visualization)
102
hg19
97
GRCh38
Lab
119
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
8
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
pancreas
BIOSAMPLE
ASSAY
119 results
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ChIP-seq
RRBS
WGBS
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
53
1
tissue
liver
25
1
1
white adipose tissue
12
adipose tissue
2
3
skeletal muscle tissue
2
right lobe of liver
1
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primary cell
skeletal muscle myoblast
15
1
1
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