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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
ChIP-seq
184
total RNA-seq
69
single cell RNA-seq
56
ATAC-seq
10
WGBS
3
DNase-seq
2
FAIRE-seq
Assay category
253
Transcription
207
DNA binding
61
DNA accessibility
10
DNA methylation
Target of assay
101
histone
101
histone modification
68
transcription factor
52
broad histone mark
49
narrow histone mark
36
control
18
RNA binding protein
10
chromatin remodeller
Date released
168
August, 2017
72
September, 2018
39
July, 2018
37
February, 2023
37
October, 2018
34
April, 2018
27
December, 2018
24
May, 2022
22
November, 2018
19
September, 2020
18
January, 2019
11
September, 2017
7
August, 2020
6
February, 2021
5
October, 2017
3
August, 2018
1
June, 2018
1
March, 2019
Available data
749
bam
678
bigWig
531
fastq
417
tsv
268
bed narrowPeak
145
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
524
Homo sapiens
Biosample type
258
primary cell
213
tissue
60
cell line
Organ
471
pancreas
465
liver
257
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
462
AMP
69
HPAP
Genome assembly (visualization)
417
hg19
411
GRCh38
Lab
436
AMP-T2D consortium
69
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
1
inconsistent control
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
531 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
13
52
12
13
6
pancreatic beta cell
13
21
12
10
pancreatic ductal cell
13
4
9
4
pancreatic acinar cell
8
4
9
5
pancreatic endocrine cell
23
+ See 5 more…
tissue
islet of Langerhans
28
103
20
1
1
body of pancreas
33
4
2
2
pancreas
16
2
1
cell line
GM12878
60
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