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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ChIP-seq
4
total RNA-seq
1
GRO-seq
Assay category
82
DNA binding
4
Transcription
Target of assay
54
transcription factor
13
control
13
histone
13
histone modification
10
RNA binding protein
10
chromatin remodeller
9
narrow histone mark
4
broad histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
13
December, 2017
13
February, 2018
1
January, 2018
Available data
96
bam
87
fastq
84
bigWig
68
bed narrowPeak
54
bigBed narrowPeak
14
tsv
3
bed bed3+
Organism
87
Homo sapiens
Biosample type
60
cell line
27
in vitro differentiated cells
Organ
471
pancreas
465
liver
257
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
87
AMP
Genome assembly (visualization)
73
GRCh38
73
hg19
1
hg18
Lab
87
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
total RNA-seq
GRO-seq
cell line
GM12878
60
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
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