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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
4
total RNA-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
GRO-seq
Assay category
42
DNA binding
4
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
18
histone
18
histone modification
15
control
10
narrow histone mark
9
transcription factor
8
broad histone mark
3
other context
3
other post-translational modification
Date released
13
December, 2017
13
February, 2018
9
November, 2018
7
December, 2018
7
January, 2019
1
January, 2018
1
October, 2017
Available data
60
bam
51
fastq
45
bigWig
28
bed narrowPeak
15
tsv
13
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed broadPeak
Organism
51
Homo sapiens
Biosample type
27
in vitro differentiated cells
24
tissue
Organ
471
pancreas
465
liver
257
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
51
AMP
Genome assembly (visualization)
35
GRCh38
33
hg19
1
hg18
Lab
51
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
BIOSAMPLE
ASSAY
51 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
ATAC-seq
DNase-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
tissue
spleen
20
2
1
1
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