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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
72
ChIP-seq
66
single cell RNA-seq
6
WGBS
Assay category
147
Transcription
72
DNA binding
DNA accessibility
6
DNA methylation
Target of assay
51
histone
51
histone modification
28
narrow histone mark
23
broad histone mark
17
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
47
September, 2018
37
February, 2023
33
July, 2018
29
April, 2018
26
August, 2017
19
December, 2017
16
September, 2020
6
February, 2021
6
November, 2017
3
August, 2018
2
October, 2018
1
June, 2018
Available data
275
bam
249
bigWig
225
fastq
155
tsv
97
bed narrowPeak
41
zippedFastqFolder
36
bigBed narrowPeak
7
tagAlign
6
bed bedMethyl
6
bed broadPeak
6
bigBed bedMethyl
6
bigBed broadPeak
6
hic
5
bed bed3+
5
bedpe bed3+
3
cool
2
hdf5
Organism
225
Homo sapiens
Biosample type
206
primary cell
19
in vitro differentiated cells
Organ
461
liver
410
pancreas
225
epithelium
97
connective tissue
60
blood
60
bodily fluid
41
adipose tissue
27
embryo
22
spleen
18
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
166
AMP
59
HPAP
Genome assembly (visualization)
151
hg19
149
GRCh38
Lab
166
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
225 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
primary cell
pancreatic alpha cell
52
13
12
6
pancreatic beta cell
21
13
12
pancreatic ductal cell
4
13
9
pancreatic acinar cell
4
8
9
pancreatic delta cell
11
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in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
See all biosamples
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