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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
66
single cell RNA-seq
53
ChIP-seq
32
ATAC-seq
6
WGBS
Assay category
147
Transcription
53
DNA binding
32
DNA accessibility
6
DNA methylation
Target of assay
37
histone
37
histone modification
21
narrow histone mark
16
broad histone mark
14
control
2
RNA binding protein
2
transcription factor
Date released
61
September, 2018
37
February, 2023
33
July, 2018
29
April, 2018
29
August, 2017
December, 2017
19
September, 2020
7
August, 2020
6
February, 2021
6
November, 2017
5
September, 2017
3
August, 2018
2
October, 2018
1
June, 2018
Available data
298
bam
285
bigWig
238
fastq
156
tsv
135
bed narrowPeak
80
zippedFastqFolder
62
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
238
Homo sapiens
Biosample type
238
primary cell
Organ
471
pancreas
402
liver
238
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
24
spleen
21
brain
14
embryo
6
vasculature
3
blood vessel
2
musculature of body
Project
169
AMP
69
HPAP
Genome assembly (visualization)
165
GRCh38
157
hg19
Lab
169
AMP-T2D consortium
69
Klaus Kaestner, Upenn
Audit category:
1
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
month_released!
December, 2017
BIOSAMPLE
ASSAY
238 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
primary cell
pancreatic alpha cell
52
12
13
13
6
pancreatic beta cell
21
12
13
10
pancreatic ductal cell
4
9
13
4
pancreatic acinar cell
4
9
8
5
pancreatic delta cell
11
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