Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
72
ChIP-seq
66
single cell RNA-seq
32
ATAC-seq
6
WGBS
2
RRBS
Assay category
147
Transcription
72
DNA binding
32
DNA accessibility
8
DNA methylation
Target of assay
51
histone
51
histone modification
28
narrow histone mark
23
broad histone mark
17
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
61
September, 2018
37
February, 2023
33
July, 2018
31
August, 2017
29
April, 2018
19
December, 2017
19
September, 2020
7
August, 2020
6
February, 2021
6
November, 2017
5
September, 2017
3
August, 2018
2
October, 2018
1
June, 2018
Available data
374
bam
369
bigWig
259
fastq
211
bed narrowPeak
165
tsv
123
bigBed narrowPeak
80
zippedFastqFolder
68
bed broadPeak
55
bed bed3+
55
bigBed broadPeak
22
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
8
hic
7
bedpe bed3+
3
cool
2
hdf5
1
tar
1
txt
Organism
259
Homo sapiens
Biosample type
238
primary cell
19
in vitro differentiated cells
2
tissue
Organ
471
pancreas
465
liver
257
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
190
AMP
69
HPAP
Genome assembly (visualization)
181
GRCh38
175
hg19
Lab
190
AMP-T2D consortium
69
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
BIOSAMPLE
ASSAY
259 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
RRBS
primary cell
pancreatic alpha cell
52
13
12
13
6
pancreatic beta cell
21
13
12
10
pancreatic ductal cell
4
13
9
4
pancreatic acinar cell
4
8
9
5
pancreatic delta cell
11
+ See 5 more…
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
tissue
skeletal muscle tissue
2
See all biosamples
Download