Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
5
total RNA-seq
2
WGBS
1
Hi-C
1
RRBS
Assay category
88
DNA binding
5
Transcription
3
DNA methylation
1
3D chromatin structure
Target of assay
77
control
9
transcription factor
2
RNA binding protein
2
histone
2
histone modification
1
broad histone mark
1
narrow histone mark
1
recombinant protein
Date released
66
November, 2017
13
December, 2017
10
August, 2017
5
January, 2019
2
November, 2018
1
December, 2018
Available data
681
bam
622
bigWig
465
fastq
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
97
Homo sapiens
Biosample type
74
cell line
22
tissue
1
in vitro differentiated cells
Organ
326
pancreas
180
epithelium
97
liver
49
connective tissue
35
adipose tissue
13
embryo
10
spleen
7
brain
6
blood
6
bodily fluid
2
musculature of body
2
vasculature
1
blood vessel
Project
97
AMP
Genome assembly (visualization)
26
hg19
7
GRCh38
Lab
97
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
97 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
WGBS
Hi-C
RRBS
cell line
HepG2
67
5
1
1
tissue
liver
17
1
1
right lobe of liver
3
in vitro differentiated cells
hepatocyte
1
Download