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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
ChIP-seq
103
total RNA-seq
29
ATAC-seq
10
DNase-seq
10
WGBS
3
RRBS
2
FAIRE-seq
Assay category
146
DNA binding
103
Transcription
41
DNA accessibility
13
DNA methylation
Target of assay
79
transcription factor
histone modification
73
histone
67
control
45
broad histone mark
28
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
135
August, 2017
43
December, 2017
42
October, 2018
26
November, 2018
24
May, 2022
10
October, 2017
7
December, 2018
6
April, 2018
6
September, 2017
2
July, 2018
1
January, 2019
1
March, 2019
Available data
1441
bam
1245
bigWig
1076
tsv
459
bed narrowPeak
303
fastq
249
bigBed narrowPeak
193
bed bed3+
178
bed broadPeak
176
bigBed broadPeak
157
txt
64
xls
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
302
Homo sapiens
Biosample type
411
cell line
336
primary cell
303
tissue
76
in vitro differentiated cells
2
stem cell
Organ
171
pancreas
65
liver
42
adipose tissue
42
connective tissue
18
spleen
5
brain
2
musculature of body
Project
303
AMP
Genome assembly (visualization)
221
hg19
207
GRCh38
Lab
277
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
18
missing controlled_by
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
303 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
RRBS
FAIRE-seq
tissue
islet of Langerhans
14
103
20
1
1
liver
54
2
1
1
body of pancreas
17
4
2
2
spleen
14
1
1
2
omental fat pad
11
1
1
subcutaneous adipose tissue
12
1
white adipose tissue
12
pancreas
4
2
1
right lobe of liver
5
1
1
adipose tissue
1
3
brain
2
2
skeletal muscle tissue
2
cerebellum (Hemisphere)
1
See all biosamples
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