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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
ChIP-seq
15
total RNA-seq
4
GRO-seq
1
DNase-seq
1
pCHi-C
Assay category
87
DNA binding
15
Transcription
1
DNA accessibility
Target of assay
65
histone
65
histone modification
33
narrow histone mark
transcription factor
31
broad histone mark
22
control
6
RNA binding protein
3
chromatin remodeller
Date released
39
February, 2018
32
August, 2017
32
December, 2017
4
January, 2018
1
August, 2018
Available data
254
bam
222
bigWig
131
tsv
108
fastq
100
bed narrowPeak
36
tagAlign
19
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
108
Homo sapiens
Biosample type
404
primary cell
298
tissue
108
in vitro differentiated cells
90
cell line
4
stem cell
Organ
33
connective tissue
24
embryo
17
epithelium
13
liver
1
adipose tissue
Project
108
AMP
Genome assembly (visualization)
85
GRCh38
85
hg19
4
hg18
Lab
108
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
108 results
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ChIP-seq
total RNA-seq
GRO-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
31
1
pancreatic endoderm
15
4
1
hepatocyte
13
definitive endodermal cell
6
2
1
primitive gut cell
6
2
1
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
Hepatic endoderm
4
Posterior foregut
3
1
islet precursor cell
1
white fat cell
1
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