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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
4
total RNA-seq
1
GRO-seq
Assay category
15
DNA binding
4
Transcription
Target of assay
12
histone
12
histone modification
8
narrow histone mark
control
4
broad histone mark
3
transcription factor
Date released
10
February, 2018
9
December, 2017
1
January, 2018
Available data
29
bam
29
bigWig
20
fastq
14
bed narrowPeak
14
tsv
2
bed bed3+
Organism
20
Homo sapiens
Biosample type
20
in vitro differentiated cells
Organ
441
pancreas
388
liver
240
epithelium
76
connective tissue
54
blood
54
bodily fluid
25
adipose tissue
20
embryo
16
brain
16
spleen
4
vasculature
2
blood vessel
2
musculature of body
Project
20
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
1
hg18
Lab
20
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
target.investigated_as!
control
BIOSAMPLE
ASSAY
20 results
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ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
13
4
1
Hepatic endoderm
2
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