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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
4
Hi-C
1
ATAC-seq
1
DNase-seq
Assay category
38
DNA binding
4
3D chromatin structure
2
DNA accessibility
Target of assay
25
histone
25
histone modification
15
broad histone mark
13
transcription factor
10
narrow histone mark
2
RNA binding protein
Date released
22
August, 2017
15
November, 2017
4
July, 2019
2
October, 2019
1
March, 2019
Available data
433
bam
407
fastq
239
bigWig
200
tsv
185
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
44
Homo sapiens
Biosample type
22
tissue
14
cell line
8
primary cell
Organ
15
liver
13
musculature of body
7
pancreas
4
blood vessel
4
brain
4
epithelium
4
vasculature
2
connective tissue
2
vein
1
adipose tissue
Project
44
AMP
Genome assembly (visualization)
303
hg19
GRCh38
Lab
43
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
2
inconsistent control read length
assembly!
GRCh38
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
Hi-C
ATAC-seq
DNase-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
1
cingulate gyrus
1
subcutaneous abdominal adipose tissue
1
cell line
HepG2
14
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
1
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
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