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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ATAC-seq
3
Hi-C
Assay category
7
DNA accessibility
3
3D chromatin structure
Date released
4
February, 2021
3
February, 2023
2
July, 2019
1
October, 2019
Available data
3075
bam
2868
bigWig
1666
bed narrowPeak
1444
tsv
1101
fastq
966
bigBed narrowPeak
391
tagAlign
300
bed broadPeak
bigBed broadPeak
252
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
10
Homo sapiens
Biosample type
7
in vitro differentiated cells
2
primary cell
1
cell line
Organ
5
connective tissue
3
brain
2
blood vessel
epithelium
2
vasculature
1
liver
1
pancreas
Project
10
AMP
Genome assembly (visualization)
10
hg19
1
GRCh38
Lab
7
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
bigBed broadPeak
organ_slims!
epithelium
BIOSAMPLE
ASSAY
10 results
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ATAC-seq
Hi-C
in vitro differentiated cells
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
primary cell
astrocyte of the cerebellum
1
brain pericyte
1
cell line
Panc1
1
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