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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
801
ChIP-seq
209
DNase-seq
27
ATAC-seq
8
Hi-C
5
FAIRE-seq
Assay category
801
DNA binding
241
DNA accessibility
8
3D chromatin structure
Target of assay
405
transcription factor
391
histone
391
histone modification
242
broad histone mark
149
narrow histone mark
93
RNA binding protein
81
recombinant protein
34
chromatin remodeller
5
other context
5
other post-translational modification
Date released
312
November, 2017
210
June, 2019
97
May, 2019
73
November, 2018
71
October, 2019
64
April, 2019
50
December, 2017
45
October, 2018
42
August, 2017
30
December, 2018
21
January, 2019
14
September, 2018
6
July, 2019
6
October, 2017
5
September, 2017
3
October, 2022
1
November, 2020
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
1044
Homo sapiens
Biosample type
561
tissue
356
cell line
116
primary cell
17
in vitro differentiated cells
Organ
359
liver
130
brain
104
kidney
95
pancreas
94
heart
85
vasculature
84
limb
81
blood vessel
81
epithelium
54
blood
54
bodily fluid
47
musculature of body
29
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
1047
AMP
3
HPAP
Genome assembly (visualization)
999
GRCh38
971
hg19
Lab
1047
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
28
inconsistent control
24
inconsistent ontology term
3
audit script error
Audit category:
15
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
4
inconsistent assembly
BIOSAMPLE
ASSAY
1050 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
FAIRE-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
+ See 53 more…
cell line
HepG2
293
GM12878
54
Panc1
6
1
1
glomerular visceral epithelial cell
1
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
1
pancreatic alpha cell
6
1
skeletal muscle satellite cell
7
+ See 25 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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