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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
2
Hi-C
2
pCHi-C
Assay category
2
3D chromatin structure
Date released
2
March, 2020
1
July, 2019
1
October, 2019
Available data
3149
bam
2907
bigWig
1574
bed narrowPeak
1574
tsv
1337
fastq
915
bigBed narrowPeak
280
tagAlign
275
bed broadPeak
247
bigBed broadPeak
238
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
bedpe bed3+
23
hic
11
bed bed3
8
csv
7
bed bedgraph
4
tar
3
cool
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
4
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
cell line
1
primary cell
Organ
brain
2
blood vessel
2
epithelium
2
vasculature
1
connective tissue
1
liver
1
pancreas
Project
4
AMP
Genome assembly (visualization)
4
hg19
1
GRCh38
Lab
4
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
brain
BIOSAMPLE
ASSAY
4 results
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Hi-C
pCHi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
Panc1
1
primary cell
endothelial cell of hepatic sinusoid
1
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