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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
2
Hi-C
Assay category
64
DNA accessibility
2
3D chromatin structure
Date released
64
August, 2021
1
July, 2019
1
October, 2019
Available data
3149
bam
2907
bigWig
1574
bed narrowPeak
1574
tsv
1337
fastq
915
bigBed narrowPeak
280
tagAlign
275
bed broadPeak
247
bigBed broadPeak
238
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
bedpe bed3+
23
hic
11
bed bed3
8
csv
7
bed bedgraph
4
tar
3
cool
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
66
Homo sapiens
Biosample type
64
tissue
1
cell line
1
primary cell
Organ
64
kidney
brain
2
blood vessel
2
epithelium
2
vasculature
1
connective tissue
1
liver
1
pancreas
Project
66
AMP
Genome assembly (visualization)
65
GRCh38
2
hg19
Lab
64
Katalin Susztak, Upenn
2
AMP-T2D consortium
Audit category:
1
inconsistent assembly
organ_slims!
brain
BIOSAMPLE
ASSAY
66 results
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ATAC-seq
Hi-C
tissue
kidney
64
cell line
Panc1
1
primary cell
endothelial cell of hepatic sinusoid
1
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