Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
4
Hi-C
Assay category
12
DNA accessibility
4
3D chromatin structure
Date released
10
February, 2023
4
July, 2019
2
February, 2021
Available data
2703
bam
2506
bigWig
1563
bed narrowPeak
1183
tsv
951
bigBed narrowPeak
887
fastq
379
tagAlign
301
bed broadPeak
278
bigBed broadPeak
244
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
16
Homo sapiens
Biosample type
5
in vitro differentiated cells
5
primary cell
5
tissue
1
cell line
Organ
7
connective tissue
4
bone element
4
brain
4
skeleton
2
blood vessel
2
epithelium
2
liver
2
vasculature
pancreas
Project
16
AMP
Genome assembly (visualization)
16
hg19
2
GRCh38
Lab
16
AMP-T2D consortium
Audit category:
1
inconsistent replicate
organ_slims!
pancreas
BIOSAMPLE
ASSAY
16 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
Hi-C
in vitro differentiated cells
chondrocyte
5
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
osteoblast
1
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
cell line
HepG2
1
Download