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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
total RNA-seq
3
small RNA-seq
2
pCHi-C
1
Hi-C
Assay category
172
Transcription
1
3D chromatin structure
Date released
144
May, 2020
9
August, 2021
8
July, 2019
5
December, 2019
5
January, 2019
2
March, 2020
1
February, 2020
1
October, 2019
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
175
Homo sapiens
Biosample type
154
tissue
15
cell line
6
primary cell
Organ
479
connective tissue
418
pancreas
401
adipose tissue
175
liver
168
heart
158
epithelium
70
blood vessel
70
vasculature
58
artery
58
bone element
29
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
175
AMP
Genome assembly (visualization)
163
hg19
162
GRCh38
Lab
166
AMP-T2D consortium
9
Bing Ren, UCSD
BIOSAMPLE
ASSAY
175 results
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total RNA-seq
small RNA-seq
pCHi-C
Hi-C
tissue
liver
147
1
1
right lobe of liver
3
2
cell line
HepG2
14
1
primary cell
hepatocyte
5
endothelial cell of hepatic sinusoid
1
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