Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
Hi-C
Assay category
16
3D chromatin structure
Date released
9
March, 2020
3
October, 2019
2
November, 2019
1
August, 2021
1
March, 2019
Available data
2424
bam
2420
bigWig
1310
bed narrowPeak
1150
tsv
861
bigBed narrowPeak
782
fastq
256
bed broadPeak
220
bed bed3+
220
bigBed broadPeak
139
tagAlign
17
bedpe bed3+
16
hic
11
bed bed3
9
bed bedMethyl
9
bigBed bedMethyl
7
bed bedgraph
4
txt
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
Organism
16
Homo sapiens
Biosample type
10
tissue
primary cell
4
in vitro differentiated cells
2
cell line
Organ
4
pancreas
3
heart
2
liver
2
musculature of body
1
blood vessel
1
epithelium
1
vasculature
Project
16
AMP
Genome assembly (visualization)
16
hg19
Lab
14
AMP-T2D consortium
2
Bing Ren, UCSD
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
lab.title!
Katalin Susztak, Upenn
biosample_type!
primary cell
BIOSAMPLE
ASSAY
16 results
search-icon
table-tab-icon
Clear Filters
Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
Download