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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
Hi-C
Assay category
15
3D chromatin structure
Date released
8
March, 2020
2
August, 2021
2
October, 2019
1
March, 2019
1
March, 2023
1
November, 2019
Available data
3180
bam
2927
bigWig
1714
bed narrowPeak
1444
tsv
1178
fastq
1018
bigBed narrowPeak
395
tagAlign
318
bed broadPeak
281
bigBed broadPeak
267
bed bed3+
76
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
15
hic
13
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
15
Homo sapiens
Biosample type
11
tissue
3
primary cell
1
cell line
Organ
3
blood vessel
3
heart
3
pancreas
3
vasculature
2
epithelium
2
liver
2
musculature of body
2
vein
1
kidney
Project
14
AMP
1
ITG
Genome assembly (visualization)
14
hg19
1
GRCh38
Lab
11
AMP-T2D consortium
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
1
audit script error
audit.ERROR.category!
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
15 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
cell line
HepG2
1
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