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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
Hi-C
Assay category
18
3D chromatin structure
Date released
10
March, 2020
4
October, 2019
1
August, 2021
1
March, 2019
1
March, 2023
1
November, 2019
Available data
2810
bam
2607
bigWig
1481
tsv
1373
bed narrowPeak
931
fastq
687
bigBed narrowPeak
378
tagAlign
270
bed bed3+
263
bed broadPeak
226
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
18
Homo sapiens
Biosample type
11
tissue
4
in vitro differentiated cells
3
primary cell
cell line
Organ
3
blood vessel
3
heart
3
pancreas
3
vasculature
2
epithelium
2
musculature of body
2
vein
1
kidney
1
liver
Project
17
AMP
1
ITG
Genome assembly (visualization)
17
hg19
1
GRCh38
Lab
15
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
1
audit script error
biosample_type!
cell line
files.file_type!
cool
BIOSAMPLE
ASSAY
18 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
See all biosamples
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