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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
Hi-C
Assay category
15
3D chromatin structure
Date released
9
March, 2020
4
October, 2019
1
August, 2021
1
March, 2023
Available data
2184
bam
2040
bigWig
1180
bed narrowPeak
1098
tsv
603
bigBed narrowPeak
460
fastq
359
tagAlign
243
bed bed3+
243
bed broadPeak
220
bigBed broadPeak
154
txt
73
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
15
bedpe bed3+
15
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
2
ibed
1
tagAlign bed3+
1
tar
Organism
15
Homo sapiens
Biosample type
8
tissue
4
in vitro differentiated cells
3
primary cell
cell line
Organ
pancreas
5
epithelium
3
blood vessel
3
heart
3
vasculature
2
musculature of body
2
vein
1
kidney
1
liver
Project
14
AMP
1
ITG
Genome assembly (visualization)
14
hg19
1
GRCh38
Lab
13
AMP-T2D consortium
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
1
audit script error
biosample_type!
cell line
organ_slims!
pancreas
BIOSAMPLE
ASSAY
15 results
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Hi-C
tissue
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
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