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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
Hi-C
Assay category
11
3D chromatin structure
Date released
March, 2020
3
October, 2022
2
August, 2021
2
November, 2019
2
October, 2019
1
March, 2019
1
March, 2023
Available data
3087
bam
2852
bigWig
1642
bed narrowPeak
1428
tsv
1217
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
11
hic
8
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
11
Homo sapiens
Biosample type
5
primary cell
4
tissue
2
cell line
in vitro differentiated cells
Organ
6
pancreas
5
epithelium
1
blood vessel
1
heart
1
kidney
1
liver
1
vasculature
1
vein
Project
7
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
10
hg19
1
GRCh38
Lab
4
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
audit script error
1
inconsistent ontology term
biosample_type!
in vitro differentiated cells
month_released!
March, 2020
BIOSAMPLE
ASSAY
11 results
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Clear Filters
Hi-C
primary cell
chondrocytes
1
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
islet of Langerhans
2
heart
1
kidney
1
cell line
EndoC_BH1
1
HepG2
1
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