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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
Hi-C
Assay category
12
3D chromatin structure
Date released
7
March, 2020
2
August, 2021
2
October, 2019
1
March, 2023
Available data
2415
bam
2249
bigWig
1433
bed narrowPeak
1052
tsv
934
bigBed narrowPeak
746
fastq
342
tagAlign
300
bed broadPeak
277
bigBed broadPeak
219
bed bed3+
152
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
12
hic
9
bedpe bed3+
8
csv
7
bed bed3
4
hdf5
4
tar
1
tagAlign bed3+
1
vcf
Organism
12
Homo sapiens
Biosample type
8
tissue
in vitro differentiated cells
3
primary cell
1
cell line
Organ
pancreas
6
epithelium
3
blood vessel
3
heart
3
vasculature
2
liver
2
musculature of body
2
vein
1
kidney
Project
11
AMP
1
ITG
Genome assembly (visualization)
11
hg19
1
GRCh38
Lab
9
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
1
audit script error
biosample_type!
in vitro differentiated cells
organ_slims!
pancreas
BIOSAMPLE
ASSAY
12 results
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Hi-C
tissue
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 2 more…
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
cell line
HepG2
1
See all biosamples
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