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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
Hi-C
Assay category
16
3D chromatin structure
Date released
8
March, 2020
3
October, 2019
2
August, 2021
2
November, 2019
1
March, 2019
Available data
2630
bam
2390
bigWig
1370
bed narrowPeak
1264
tsv
949
fastq
871
bigBed narrowPeak
292
tagAlign
268
bed broadPeak
231
bed bed3+
231
bigBed broadPeak
161
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
18
bedpe bed3+
16
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
16
Homo sapiens
Biosample type
10
tissue
4
in vitro differentiated cells
primary cell
2
cell line
Organ
4
pancreas
3
heart
2
liver
2
musculature of body
1
blood vessel
1
epithelium
1
kidney
vasculature
Project
16
AMP
Genome assembly (visualization)
16
hg19
Lab
13
AMP-T2D consortium
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
biosample_type!
primary cell
organ_slims!
vasculature
BIOSAMPLE
ASSAY
16 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
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