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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
12
Hi-C
Assay category
60
DNA accessibility
52
Transcription
41
DNA methylation
12
3D chromatin structure
Date released
134
May, 2022
19
September, 2020
3
March, 2020
3
October, 2019
3
October, 2022
1
August, 2021
1
March, 2023
1
November, 2019
Available data
1485
bam
1397
bigWig
981
fastq
833
bed narrowPeak
524
tsv
481
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
109
bed broadPeak
109
bigBed broadPeak
68
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
165
Homo sapiens
Biosample type
159
primary cell
tissue
4
in vitro differentiated cells
2
cell line
Organ
86
epithelium
84
pancreas
2
blood vessel
2
vasculature
2
vein
1
liver
Project
156
HPAP
8
AMP
1
ITG
Genome assembly (visualization)
11
hg19
1
GRCh38
Lab
156
Klaus Kaestner, Upenn
7
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
Audit category:
5
inconsistent ontology term
4
audit script error
biosample_type!
tissue
BIOSAMPLE
ASSAY
165 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
1
pancreatic beta cell
16
13
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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