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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
Hi-C
1
DNase-seq
1
pCHi-C
Assay category
3
3D chromatin structure
1
DNA accessibility
Date released
2
October, 2019
1
August, 2021
1
February, 2021
1
November, 2019
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
5
Homo sapiens
Biosample type
216
tissue
43
primary cell
29
in vitro differentiated cells
5
cell line
3
stem cell
Organ
3
pancreas
2
liver
1
epithelium
Project
5
AMP
Genome assembly (visualization)
5
hg19
2
GRCh38
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
5 results
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Hi-C
DNase-seq
pCHi-C
cell line
HepG2
1
1
Panc1
1
1
EndoC_BH1
1
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