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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
Hi-C
19
RRBS
Assay category
23
3D chromatin structure
19
DNA methylation
Date released
15
July, 2019
10
March, 2020
4
August, 2017
4
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3392
bam
bigWig
1817
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
42
Homo sapiens
Biosample type
20
tissue
16
primary cell
4
in vitro differentiated cells
2
cell line
Organ
12
epithelium
9
pancreas
5
heart
5
kidney
5
musculature of body
4
liver
4
vasculature
3
blood vessel
2
brain
2
vein
1
connective tissue
1
eye
1
pericardium
Project
38
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
41
hg19
1
GRCh38
Lab
35
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
7
inconsistent ontology term
4
audit script error
files.file_type!
bigWig
txt
BIOSAMPLE
ASSAY
42 results
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Clear Filters
Hi-C
RRBS
tissue
islet of Langerhans
2
1
heart left ventricle
1
1
kidney
1
1
liver
1
1
pancreas
1
1
+ See 7 more…
primary cell
endothelial cell of umbilical vein
2
cardiac fibroblast
1
cardiac muscle cell
1
chondrocytes
1
choroid plexus epithelial cell
1
+ See 10 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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