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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
278
ATAC-seq
209
DNase-seq
23
Hi-C
5
FAIRE-seq
Assay category
492
DNA accessibility
23
3D chromatin structure
Date released
187
June, 2019
78
August, 2021
65
February, 2023
38
May, 2022
28
November, 2019
19
October, 2019
18
February, 2021
14
September, 2018
13
May, 2021
10
August, 2017
10
March, 2020
10
November, 2018
7
July, 2019
6
October, 2017
5
September, 2017
3
October, 2022
2
November, 2020
1
March, 2019
1
March, 2023
Available data
1814
bam
1779
bigWig
1600
tsv
501
fastq
492
bed narrowPeak
241
bigBed narrowPeak
220
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
515
Homo sapiens
Biosample type
400
tissue
75
primary cell
26
in vitro differentiated cells
14
cell line
Organ
145
kidney
81
pancreas
80
heart
61
vasculature
60
epithelium
59
blood vessel
49
artery
44
limb
35
musculature of body
33
brain
31
eye
30
liver
18
ureter
17
connective tissue
8
bone element
8
skeleton
6
adipose tissue
5
vein
3
nerve
2
spleen
Project
511
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
416
GRCh38
392
hg19
Lab
402
AMP-T2D consortium
65
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
Audit category:
21
inconsistent ontology term
4
audit script error
1
inconsistent replicate
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
515 results
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Clear Filters
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
tissue
kidney
64
13
1
1
islet of Langerhans
37
1
2
1
coronary artery
36
2
liver
20
2
1
heart
18
1
+ See 55 more…
primary cell
monocyte
13
pancreatic beta cell
7
1
pancreatic alpha cell
6
1
pancreatic acinar cell
5
1
endothelial cell of umbilical vein
2
2
1
+ See 26 more…
in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
cardiomyocytes (cardiac muscle cell)
1
2
adipocyte
1
1
cardiac precursors (cardiac muscle cell)
1
1
+ See 4 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
1
1
HepG2
1
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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