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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
Hi-C
19
RRBS
17
WGBS
12
ATAC-seq
Assay category
36
DNA methylation
23
3D chromatin structure
12
DNA accessibility
Date released
23
July, 2019
10
February, 2023
10
March, 2020
7
November, 2018
6
August, 2017
4
October, 2019
3
October, 2022
2
August, 2021
2
February, 2021
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
71
Homo sapiens
Biosample type
41
tissue
17
primary cell
9
in vitro differentiated cells
4
cell line
Organ
13
pancreas
12
epithelium
11
heart
9
connective tissue
6
liver
6
musculature of body
5
kidney
5
vasculature
4
blood vessel
4
bone element
4
skeleton
3
brain
2
adipose tissue
2
spleen
2
vein
1
eye
1
limb
1
pericardium
Project
67
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
53
hg19
20
GRCh38
Lab
64
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
7
inconsistent ontology term
4
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
71 results
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Hi-C
RRBS
WGBS
ATAC-seq
tissue
heart left ventricle
1
1
2
pancreas
1
1
2
heart right ventricle
1
2
islet of Langerhans
2
1
adipose tissue
2
+ See 16 more…
primary cell
endothelial cell of umbilical vein
2
cardiac fibroblast
1
cardiac muscle cell
1
chondrocytes
1
choroid plexus epithelial cell
1
+ See 11 more…
in vitro differentiated cells
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
1
1
1
EndoC_BH1
1
See all biosamples
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