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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
29
DNase-seq
22
ATAC-seq
6
Hi-C
1
FAIRE-seq
Assay category
56
DNA binding
52
DNA accessibility
6
3D chromatin structure
Target of assay
46
histone
46
histone modification
25
narrow histone mark
21
broad histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
47
June, 2019
18
August, 2017
14
October, 2019
14
September, 2018
6
November, 2017
5
September, 2017
4
May, 2019
3
October, 2022
1
March, 2020
1
March, 2023
1
November, 2020
Available data
608
bigWig
604
bam
404
fastq
290
bed narrowPeak
270
tsv
153
zippedFastqFolder
108
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
114
Homo sapiens
Biosample type
566
tissue
333
cell line
114
primary cell
21
in vitro differentiated cells
Organ
66
epithelium
25
pancreas
23
vasculature
19
blood vessel
16
kidney
15
connective tissue
15
vein
11
brain
9
musculature of body
6
heart
3
eye
2
liver
Project
110
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
106
hg19
105
GRCh38
Lab
110
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
ITG
Audit category:
23
inconsistent ontology term
4
audit script error
Audit category:
2
inconsistent assembly
inconsistent control read length
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
114 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
10
2
2
1
skeletal muscle myoblast
13
2
pancreatic beta cell
7
1
pancreatic alpha cell
6
1
skeletal muscle satellite cell
7
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