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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
Hi-C
2
pCHi-C
Assay category
18
3D chromatin structure
Date released
11
March, 2020
3
October, 2019
2
August, 2021
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3372
bam
3144
bigWig
1804
bed narrowPeak
1594
tsv
1189
fastq
1029
bigBed narrowPeak
398
tagAlign
318
bed broadPeak
281
bigBed broadPeak
271
bed bed3+
161
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
bedpe bed3+
18
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
20
Homo sapiens
Biosample type
11
tissue
6
in vitro differentiated cells
2
cell line
1
primary cell
Organ
4
pancreas
3
blood vessel
3
epithelium
3
heart
3
vasculature
2
liver
2
musculature of body
vein
1
kidney
Project
19
AMP
1
ITG
Genome assembly (visualization)
19
hg19
1
GRCh38
Lab
16
AMP-T2D consortium
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
7
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
organ_slims!
vein
BIOSAMPLE
ASSAY
20 results
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Clear Filters
Hi-C
pCHi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
cell line
EndoC_BH1
1
HepG2
1
primary cell
chondrocytes
1
See all biosamples
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