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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
Hi-C
1
ChIP-seq
Assay category
19
3D chromatin structure
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
10
March, 2020
5
October, 2019
2
August, 2021
2
November, 2019
1
March, 2019
Available data
3206
bam
2933
bigWig
1689
bed narrowPeak
1496
tsv
1189
fastq
1042
bigBed narrowPeak
322
bed broadPeak
314
tagAlign
285
bigBed broadPeak
273
bed bed3+
161
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
20
Homo sapiens
Biosample type
12
tissue
4
in vitro differentiated cells
2
cell line
2
primary cell
Organ
4
pancreas
3
blood vessel
3
epithelium
3
heart
3
vasculature
2
liver
2
musculature of body
2
vein
1
brain
1
kidney
Project
20
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
20
hg19
1
GRCh38
Lab
17
AMP-T2D consortium
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
20 results
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Hi-C
ChIP-seq
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 5 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
primary cell
endothelial cell of umbilical vein
2
See all biosamples
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