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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
total RNA-seq
100
single cell RNA-seq
12
ATAC-seq
6
Hi-C
6
WGBS
2
small RNA-seq
Assay category
252
Transcription
12
DNA accessibility
6
3D chromatin structure
6
DNA methylation
Target of assay
3
control
Date released
52
May, 2021
48
July, 2018
45
May, 2020
43
April, 2018
26
September, 2018
18
July, 2019
12
February, 2023
7
February, 2021
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2019
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
276
Homo sapiens
Biosample type
1087
tissue
276
primary cell
135
in vitro differentiated cells
121
cell line
4
stem cell
Organ
121
epithelium
111
pancreas
15
connective tissue
6
kidney
5
liver
4
blood vessel
4
heart
4
vasculature
3
brain
2
adipose tissue
2
artery
2
musculature of body
2
vein
1
pericardium
Project
170
AMP
96
T1D
9
HPAP
1
ITG
Genome assembly (visualization)
257
hg19
253
GRCh38
Lab
170
AMP-T2D consortium
96
Kyle Gaulton, UCSD
9
Klaus Kaestner, Upenn
1
ITG
Audit category:
17
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
276 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
Hi-C
WGBS
small RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
10
12
1
6
pancreatic beta cell
10
12
1
pancreatic acinar cell
4
12
1
pancreatic ductal cell
4
10
pancreatic delta cell
11
pancreatic polypeptide-secreting cell
9
pancreatic cell
7
mesenchymal cell
6
hepatocyte
5
osteoblast
5
pancreatic stellate cell
4
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
central memory CD8-positive, alpha-beta T cell
2
cerebellar granule cell
2
co-expressing pancreatic endocrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell
2
endothelial cell of umbilical vein
2
enteroendocrine cell
2
gamma-delta T cell
2
mast cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
mesenchymal stem cell of adipose
1
1
naive B cel
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
pancreatic epsilon cell
2
regulatory T cell
2
skeletal muscle satellite cell
1
1
unclassified exocrine cell
2
unclassified pancreatic endocrine cell
2
Purkinje cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
chondrocytes
1
embryonic stem cell
1
endothelial cell of coronary artery
1
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
immature natural killer cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
mesangial cell
1
myeloid dendritic cell
1
natural killer cell
1
pericardium fibroblast
1
plasma cell
1
plasmacytoid dendritic cell
1
renal cortical epithelial cell
1
skeletal muscle myoblast
1
smooth muscle cell of the coronary artery
1
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