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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
24
Transcription
2
DNA methylation
Target of assay
3
control
Date released
13
July, 2019
12
February, 2020
2
March, 2020
1
October, 2019
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
0
hic
Organism
28
Homo sapiens
Biosample type
24
tissue
4
primary cell
Organ
481
connective tissue
430
pancreas
403
adipose tissue
179
heart
179
liver
168
epithelium
73
vasculature
72
blood vessel
58
artery
58
bone element
29
kidney
28
brain
15
musculature of body
14
embryo
8
limb
6
eye
5
nerve
3
spleen
2
intestine
2
pericardium
2
vein
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
28
AMP
Genome assembly (visualization)
14
hg19
12
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
28 results
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total RNA-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
tissue
frontal cortex
2
1
Ammon's horn
1
1
brain
1
1
cerebellum
2
cerebellum (Hemisphere)
1
1
+ See 11 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
choroid plexus epithelial cell
1
See all biosamples
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