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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
total RNA-seq
7
Hi-C
6
WGBS
Assay category
106
Transcription
7
3D chromatin structure
6
DNA methylation
Date released
51
May, 2021
45
May, 2020
12
August, 2021
6
February, 2021
3
October, 2022
1
March, 2019
1
March, 2023
Available data
310
bigWig
274
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
119
Homo sapiens
Biosample type
106
primary cell
10
cell line
3
tissue
Organ
11
pancreas
10
liver
9
epithelium
1
kidney
Project
96
T1D
13
AMP
9
HPAP
1
ITG
Genome assembly (visualization)
102
hg19
97
GRCh38
Lab
AMP-T2D consortium
96
Kyle Gaulton, UCSD
12
Bing Ren, UCSD
9
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
3
audit script error
organ_slims!
gonad
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
119 results
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total RNA-seq
Hi-C
WGBS
primary cell
monocyte
53
pancreatic alpha cell
1
6
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
+ See 24 more…
cell line
HepG2
9
1
tissue
islet of Langerhans
1
1
kidney
1
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